## ---- Raw UMI counts ---- ## 01.UMI.txt.gz row: Ensembl Gene ID (23384 genes) col: Cell barcode (61202 cells) ## ---- Normalized expression ---- ## 02.UMI.lognorm.txt.gz row: Ensembl Gene ID (23384 genes) col: Cell barcode (61202 cells) ## ---- Table of Sample - Cell barcode ---- ## 03.Cell.Barcodes.txt.gz Col1: Cell barcode (61202 cells) Col2: Sample ID Col3: Sample Type (SC and CT denotes supercentenarians and controls) ## ---- The second sequencing of SC1 ---- ## 04.SC1.tar barcodes.tsv.gz: Cell barcode features.tsv.gz: Ensemble Gene ID matrix.mtx.gz: pression matrix in the Market Exchange Format ## ---- The second sequencing of SC2 ---- ## 05.SC2.tar barcodes.tsv.gz: Cell barcode features.tsv.gz: Ensemble Gene ID matrix.mtx.gz: pression matrix in the Market Exchange Format ## ---- Softwares ---- ## Cell Ranger https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest Genome with annotations for Cell Ranger http://cf.10xgenomics.com/supp/cell-exp/refdata-cellranger-GRCh38-1.2.0.tar.gz Cell Ranger R kit https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/rkit Seurat https://satijalab.org/seurat/ Monocle http://cole-trapnell-lab.github.io/monocle-release/ ## ---- Raw sequencing data ---- ## NBDC Human Database (Controlled-Access) https://humandbs.biosciencedbc.jp/en/hum0229-v1